Scaffold Ga0153799_1000354

Overview

Basic Information

• Taxon OID: 3300012012
• Scaffold ID: Ga0153799_1000354
• Source Dataset Name: Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15309
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.581667
  • Long. (^o): -79.9225
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012017	Metagenome / Metatranscriptome	284	N
F084179	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153799_10003541	F084179	AGAAG	MWPEGGEGIVGKVCRNKQYNELRVMGEKGELWTKVGNWQFTGGLVRGERVLVNRVWVSGDDTDAEYEVVRRMDVNEEVPQVPTVVEQPLVEPSAVSELETPVAILPQFQREEPDYPRKQESADDYIARIRAEAAKWANGQGR*
Ga0153799_10003547	F012017	AGG	MPQKRILIGTPLKGDIPKSYFRTSLQMVTAEIPDVKLDWILLDGPAVQIARNEIAHYAVEQKFDELIFWDKDVLAQRNGEDVTASALMRLIGHDRDIVTAVYSSRSLNTHWHVHPIKGEEPDEAGLQRVERASIGFSKIKVPVFKKIALANIDRVAMLVDPNKAPKLVPELFPMELKGRNTPEHRMKQIWAALSEVKNDEALRARIERELTIRYDEPNAFISEDFGFCDLARAAGYDIWMDTLMVLGHQASVVVPVETGKLLEMLSEPWRKEELAVIKQQMLEAQAAKKK*