Scaffold Ga0153799_1000080

Overview

Basic Information

• Taxon OID: 3300012012
• Scaffold ID: Ga0153799_1000080
• Source Dataset Name: Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34967
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (85.48%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.581667
  • Long. (^o): -79.9225
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006258	Metagenome / Metatranscriptome	377	Y
F014952	Metagenome / Metatranscriptome	258	Y
F044986	Metagenome / Metatranscriptome	153	N
F060850	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153799_100008016	F006258	AGGGGG	MGIQAFTKLGNTVTFTADTSAPAAVQAASTTLGGNQYRLINAGTNIVFLGYGTDAATAAVNAGNVATSLPLLAGTDEILSFVPNAYFTGKTASGTSVIYISPGDGL*
Ga0153799_100008029	F014952	AGG	MANNIPFQVKGKTTRINLTTSANTVAILADNPSNQLRIHNGTAAEVFLRVGTSASDEAVIPVAGTPAYGFVLHNNGTVIITTPAQASNGNTCFVSGIVASGNAVIYVTPGEGL*
Ga0153799_100008051	F060850	GGA	MYLSDEIINNAIDVILNTREFCGNEMLAVHEYCADENIEDWLRVYRIANFRANAKWNQYKKQAGVNPKYCF*
Ga0153799_10000807	F044986	AGGAG	MSSKILVAGSATNAAGAFLQAYALGNATATIPAGDYYIAPTGNVTIELNTNTTGNISNASYAVVVANNTGGYFIADGVNIRANVLAGTPTITLFQVNQGQAVSETYA*