Scaffold Ga0153799_1000076

Overview

Basic Information

• Taxon OID: 3300012012
• Scaffold ID: Ga0153799_1000076
• Source Dataset Name: Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35473
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (73.47%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.581667
  • Long. (^o): -79.9225
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015703	Metagenome / Metatranscriptome	252	Y
F036141	Metagenome / Metatranscriptome	170	Y
F048791	Metagenome / Metatranscriptome	147	Y
F074495	Metagenome	119	Y
F078215	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153799_100007610	F015703	N/A	VKQYFNGFLDSLDEQLFEIKFDQYRNGRMVVECEQNPQNKGWKPSGLMVTEAKWWIYVFSAQAFIAVEVARLKKYLEINNKIPVKEFARFSANPTKGYLLFPEDVSKLLSSELYD*
Ga0153799_100007619	F078215	AGGAG	MAFDPSVFEETRRRLFNQFGQQAALTAYQKYLAEVRGQRPIAQLEESAFGFTPTGKMGDVPRLTSSYGRRGLTGISTRSGVYNRALQSYSKERAKQLGYAREDLAGTTRGYDLAQTQGLASYEQGIADLESLKARQIAADAQALLNLR*
Ga0153799_100007628	F048791	AGGAG	MAINFSNANLTLAQMRTFVGELSDLDIGFDENDDISTDLVNGFVKEGFQKVVALSNRWPYYQTTYSLAVVTGIRPYTSFQQTQPTVIGSNPKGITDISQIISVVNSDSNYSGNSLIYLDQAKCESIWVGASDQQSSPAYYSVWADQLNIWPLPDNDYSFTIRGFRNPSLTWMQNEGDPIDISPQLQLPLINYVMARIFQFQEDTEMANEYMRSFERAIAIIQGNLTAPSSNRQLIMSGGLQLQAYDFAPGNYGGMQVIPGSPYPGGIAI*
Ga0153799_100007629	F074495	AGGAG	MNKQTQGVGQGLAGTQPYGTVDGARHVGSIMADYHGAGVEIAPPSGVAYGGVHYKNGLCQAMNKKEEQCKAPKAKGTDYCAGHLNALKKMGEEQDAALDPKE*
Ga0153799_100007640	F036141	N/A	MEWIVPIAVALIGGPLVVVVQKLRDENTSQHAEARALLHRVADKVDKVDDKLDGHIAWHLTKPTRRKKSESQN*