Scaffold Ga0120152_1001989

Overview

Basic Information

• Taxon OID: 3300012011
• Scaffold ID: Ga0120152_1001989
• Source Dataset Name: Permafrost microbial communities from Nunavut, Canada - A30_65cm_6M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10381
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Axel Heiberg Island, Nunavut
• Coordinates
  • Depth (m): .65

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026748	Metagenome	197	Y
F052097	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120152_100198911	F026748	N/A	MTLRVFGIAPGQPRRNLAEWSLAPNAAGEFDRSLAVVVGRAYSDVCVVASISTREPECPAPVEVGTVWTQLAVPAAQ*
Ga0120152_10019895	F052097	GAGG	LALAVRRRPRLGTIALALLAIGVVGAAVVDSLGKSLSHAKTKDVVAVRDVKLANRDGLAARLRTESVSGVLYFVDGACRLHALRLPSLATAPAPRGGGCRALVSPASAPPGWSLWPRNTPLAARCDEHRRVIVSATTGPSLPMIGGCAPAWRPDGSMTYIRRGAIVQFPRTGRAQVLRSASQLAGALERLPALRGTSGWHAMRVAWLSPARFAVVASNGSRTVLAVFSGRRIVALKPRLPSRLIELRGSPRGTYVVLGTASGVRVYDARRRDLPRVRRFGLLVSVAWSSDEGWLAVAQAQKVLLVGPHRSVVLPLRALDLAWTRDLS*