NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120118_1000769

Scaffold Ga0120118_1000769


Overview

Basic Information
Taxon OID3300012010 Open in IMG/M
Scaffold IDGa0120118_1000769 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Nunavut, Canada - A7_35cm_12M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11858
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (35.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Axel Heiberg Island, Nunavut
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).35
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029292Metagenome189N
F033381Metagenome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0120118_100076910F033381GAGMDEEWRSVVDGQWLRDCMDEWRDWGHVVMRAKWTMDGATTLAEAAARHRERAEELDELARAGFELEQPVDDDYAFIVRPGEESPMRLVEEDE*
Ga0120118_10007699F029292AGGVTEDEIREYMEEWRDFGYLFIRARWTMDGAKTLTEAAQRFRDRADTLEQLARAGFELDQPADNGFAVAVRPGEESPMRLVEEDAHTNS*

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