Scaffold Ga0120382_1000051

Overview

Basic Information

• Taxon OID: 3300012007
• Scaffold ID: Ga0120382_1000051
• Source Dataset Name: Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1009
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Missouri
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 129669
• Total Scaffold Genes: 170
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 68 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen → Ruminant Gut Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 41.314168
  • Long. (^o): -105.584589

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058536	Metagenome	135	Y
F077963	Metagenome	117	N
F088010	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120382_10000514	F077963	N/A	MKLLRKTLDFFNIHPDHNQRWTLTTLFFTGLLYTYVEPAITKAWISELPAEWLAFQSLTYSIVGLVIGMIWKGRLRRWAIRWFTVLCIIESAAGFLVGMWLCFVDYNVWVLAIACLLYGTLVSEFIGKCLMTFRPKLWNEKEREVYDNNNDVVCGIYCIVGYVCALVCMPSLQVAMFVFGLTCGLDNIGWLVVYHKNRDRFREIDNEENI*
Ga0120382_100005178	F088010	N/A	MKKNFFEKLMGVLLLAVMALVCSCNGCKGETPKIDDPVVLYHDYDGVVQDFTAGVGHIQALHRQTMSSLTGGKEYQWRNSRVILNDTVTMENIDDLHVAAVNDVFFYWDSQKGPMVQYINSHVKYGVQIPYPINDVWIEDADMSEQPIKISAEQALMRLKEWNGILPKDCNFLTLRLPVGPKDCNVQWVFGDVYDVLFIDAVTGEIRDYDPSFSRQ*
Ga0120382_100005193	F058536	N/A	MAQQLKTLALSELRRVAERTRLVNRRLPDGKGGYKVEQVVERIPWRVWYIAASNGDVIRGEKCVTIAVYPQEGTRLVQFTSGQTRKLRDCCILRADDFRLTV*