Scaffold Ga0119955_1099630

Overview

Basic Information

• Taxon OID: 3300012006
• Scaffold ID: Ga0119955_1099630
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 819
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010398	Metagenome	304	Y
F018927	Metagenome	232	Y
F043399	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119955_10996301	F018927	AGG	MNKHIEITRHLTVDGTTTYYVIEKSKSKNSTSIIWNGTCKQAAYQVAYRNARKENTPLYDTIYKAEFDRN
Ga0119955_10996302	F043399	N/A	MLLDDYPIVIWTIVKKNNNYILLDSCGVEVFRRKENRKKEIYQYCQDNGIDFQEEF*
Ga0119955_10996303	F010398	AGGAG	MEISIQGVTKVNYELVIDEDVFNDACEECGLDPANYKKFTKDEWDVLNPHLVQAVIDNESEIDYTEIHVESSVFADTLTIDDSDNLTTVYYDKNRKTDSVEIQ*