Scaffold Ga0119955_1035816

Overview

Basic Information

• Taxon OID: 3300012006
• Scaffold ID: Ga0119955_1035816
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1620
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072344	Metagenome	121	N
F078721	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119955_10358162	F078721	GAGG	MIVDVSGINKLMDIWGEDCVCFFNETETTLSKLRDHFEDNNLNFPIEEIKYPYSEIEFNNNILLIVNNKKNRDDLKISSRENIDLDV*
Ga0119955_10358163	F072344	N/A	LKCYNAAMFRVQLNKCHCKLIIKTLDLHKTVIKGEINKISPLMIENKKTQLKYNYDFEESFDFRAHSFFNLLCDLEKEHVKRYFNVLQLYPRSDTIVRVKKKLYSLMNFLSGDLSDVLPVSFSSDEINVIKLSLELYFNLLCGKFEILSKVFEELDINLNFEVIISRLCENRDLFTNLVDQKSSLNISSNLIYYKAKWAWDMFNVLEGLEYGKIGSIPLLQIEEVDDSRRFRH*