Basic Information | |
---|---|
Taxon OID | 3300012006 Open in IMG/M |
Scaffold ID | Ga0119955_1015558 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Institute of Technology |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2753 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.21 | Long. (o) | -83.96 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F012968 | Metagenome / Metatranscriptome | 275 | Y |
F028785 | Metagenome / Metatranscriptome | 190 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0119955_10155582 | F012968 | N/A | MELDINLTETVSCAMAQETGTPIQECEFQANQMTGTDNSLDDLEVISEE* |
Ga0119955_10155583 | F028785 | AGGA | MRPIRKQELDYLDRLINNKFQEKQSAIRSQCEIEVQKQLEKDFDKFVATLKLDKLIKEAEVAEKEYLDFKASKDMKENALHHNANKKKQALKDKFNHWNEIRQWHLSSRSDNDLDCILSTIKSACRVELEEKYKNSEKGKFFKYLESGIEDAKNTLYSGLSIDDVWKNLENIFNKAQIEVRVPKSFAQIAK* |
⦗Top⦘ |