Scaffold Ga0119955_1010521

Overview

Basic Information

• Taxon OID: 3300012006
• Scaffold ID: Ga0119955_1010521
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3517
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048283	Metagenome / Metatranscriptome	148	N
F063654	Metagenome / Metatranscriptome	129	N
F063657	Metagenome / Metatranscriptome	129	N
F066734	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119955_10105213	F066734	GGAG	MVQNALWVAFRGVLACVSTFRRRWRRVIAATTMGIAIARAVIWVAKAVASAGTVDTALNLIGLGEYVRPFEDAVDGVIATVVSVIVTVTPTG*
Ga0119955_10105215	F063654	GGAG	MTTMKREKLAPRMDPTRYTHSYRVEAVPQYRGFTVNKGKREVHYLGLILWDQEDREWRNTECRQIARLTESDGVYTISVVGPLTVRDWSAAKLAKARAFNGEWRDVWSGDAILGVTLMEAVTRLRALRDAMQEDADAYRRGQ*
Ga0119955_10105217	F048283	GGCGG	MQATKGGTVEIEITYTPALIGVGADVGDDVDASCDAFEVQVHREVTASYPDADVTVTRDHGHLADLSVVTHGVEDRPGVLTVRQAVWSDVWDIISPYGRYRRPVRGATATALAPVVAKPGSGRDVYTILVDDASGDSVIEVDEDEVRAIMRSGFGVMA*
Ga0119955_10105218	F063657	GGA	MNGDLMSDVITEVSVTGAVTTDGRLRFRSPLDVEAWAHDHLVARLAWEFLIDGADNGVPRDTDEALERVQTRYIPEAVRRTMRGRFSGGLSLTWAVYGLDDGR