Scaffold Ga0119955_1009904

Overview

Basic Information

• Taxon OID: 3300012006
• Scaffold ID: Ga0119955_1009904
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3655
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007859	Metagenome / Metatranscriptome	343	Y
F008688	Metagenome / Metatranscriptome	329	N
F009135	Metagenome / Metatranscriptome	322	Y
F010081	Metagenome / Metatranscriptome	308	Y
F013524	Metagenome / Metatranscriptome	270	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119955_10099042	F009135	AGG	MTNNPKYYLTVNLPPNFDDVDAEAIKTDLMAYINSKNQYGAMYGPKSHKKGITIDKVIYRTNED*
Ga0119955_10099043	F013524	N/A	MKTNKEVVDRLKEFTNNNCNTTIDPKLCEDIRYLCDEVERFSREIVKANNHMDEDHITIQRYKNKLEKCQQNLSIYEPF*
Ga0119955_10099044	F008688	N/A	MLGGLAAVLLTAMTVEPPKIKVYLITSYRGNDLTIEKVYLKKENAEKYRDMFKDSHNYTVEERELTE*
Ga0119955_10099045	F007859	GAG	MKKLLIIALLSTGCTSGMLLRYSYNRALETLPPCSRVHAINNRYITYSMIENSTNNVYTAHTNYYRAYYNCDGKIIKITPNN*
Ga0119955_10099046	F010081	N/A	MQDKIDSIIKKHCLEMQEVDKTKSIPMIVKQLDGIVYSMYRELYGLRDIRSDNYYLNSFTADDKKGHCC*