Scaffold Ga0119955_1008377

Overview

Basic Information

• Taxon OID: 3300012006
• Scaffold ID: Ga0119955_1008377
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4062
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F002406	Metagenome	562	Y
F009266	Metagenome / Metatranscriptome	320	Y
F027179	Metagenome	195	Y
F054036	Metagenome	140	Y
F060914	Metagenome	132	N
F101144	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119955_100837710	F054036	GAGG	MKLDFKVSGTINVPEDAIKHYDVAGKLYALEFNDTMYMLQVCLVAENSDGEYEMIHQYDEMLSNNISDLRYDEAEFVEG*
Ga0119955_10083772	F101144	N/A	MEAKTFTFYSTERHGYVETTRAYLRKLKISKLISPYSRQSGNKVYIEEDGDLSLFCKRHTVAGISIVLKEEEKPQSFFDNMWNYRDDECQDEQFDGFKSEWSLSQRVHFVKPDNIKHVRNSTFETKDGKCLKIVPTFYLDGKALNESQLKKLGIELTTITTGELDYEYEH*
Ga0119955_10083773	F009266	AGGA	MTDKERKILDKEIQYLCEQQDRVKAIREYTNINPHYTFLKEVETIEGLYKWVLENRKKEESTYFSCGTSGWYVVYLRDKKKYKKGEDFRIKIFHTFVWTDNLE*
Ga0119955_10083774	F002398	AGGAG	MIPLISIFLLTSLDPIKNFVSLKTYISENAKIHCHVYFINEDIPDYPRVNVIEKNKFDFFAYLDTIGIEHSQVGSYYFFYRKPK*
Ga0119955_10083775	F060914	AGCAG	LKRLIKVRSDISASIYPIQLFQVDDYFTAEEDGVELFRYKSQHLCSIKAKELIRKRKNEKNAQIIQNIKELKEQGIL*
Ga0119955_10083776	F027179	N/A	MADGLFLYEKENSYVVMDQYDNVLKEFKTSASCSRYILKTLLSRRAAERYAIEEINKSKV
Ga0119955_10083777	F002406	N/A	MENLKWIRAMSDRLRDELSKEYDDDTKDLIIRAFMQGLYQQPAIVEELKSSSLIESDYFEDNDETDLHG*