Scaffold Ga0119955_1008176

Overview

Basic Information

• Taxon OID: 3300012006
• Scaffold ID: Ga0119955_1008176
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4120
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001561	Metagenome / Metatranscriptome	670	Y
F008552	Metagenome	331	Y
F009750	Metagenome	313	Y
F013087	Metagenome	274	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119955_10081763	F008552	AGGGGG	MAWIKKNLQLRLRYGVHHTYKFFTIIFFLEITYKKRYNIPVMIISFEASANVDTTLFGYFTMEYDPELFSDIKENLTEISKDQPLSFKLNNDNVKLLHGRFENIRRIISIQDIEQNKYTDVFKRDFKTTTFKKFKFIKLHIDKDYFYFTGHYDTQKGTNPIEFQSLNFDTRFLESLEKKYNKAMVE*
Ga0119955_10081764	F013087	N/A	MEPTVWIYFSKTGTGYELKGSDVVSGFDAFIGVDGTYMVEYAFSDIKNSMHFFIYEWDNSQKKRRTIFEGYQRQNILVNFAKNVNVCHLVRQAIYQEYLMDTEEEELENANS*
Ga0119955_10081765	F001561	GAGG	MQTRKQKIEQLNKAIDVLWHGVKDTKDGDYPRIIFLYKEMLKLDPKNSDAWENMIWLMWSLSINKKDTAWMIEAEKFVKMYLSIMPNGYRAYEYIGMFYRTMVKDERLAIRYYESAIRWKDAPESTHHSLISLCNKTGDKVRAIGYCKMTLARFPNDPWTKSKIQELTKN*
Ga0119955_10081766	F009750	GAG	MKEIITAIYQNGKFKDNKILKPHLTDRIGIRMTFPEGAECILWTNGKKYYAVCEAFGTIFTVNIPRNIGDDIWLRFKTQFEGNYSYNPF*