Scaffold Ga0119955_1005750

Overview

Basic Information

• Taxon OID: 3300012006
• Scaffold ID: Ga0119955_1005750
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5165
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012971	Metagenome	275	Y
F016392	Metagenome	247	Y
F097250	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119955_10057507	F097250	AGGAG	MSNIVHSALNLVTHHTNAVMIRFLSYFQIWTPTLSLKERQRLLRKASKRMKEQPKVQRVVMPSKPITDPTFGYVNSALTDVSATWKKHLTGVKNAGLFNNPNADGKNDKESGAEMPPQKIRRVQ*
Ga0119955_10057508	F012971	AGGAG	MMDFEREKWMALQDLTPSDVADAVCDSQAIVEAIQSNAWADVADMIRSRVELKAERLAQVACDLPLSKWIDSEEELELWRYYRAELAREAIELNKSKLPKINPYQRGQQ*
Ga0119955_10057509	F016392	AGGAG	MNSPWDYKGQPSVWLSDEKMKRFKQGEEFAKRKQDKRGIHEQNQVFIYSKALSSKK*