Scaffold Ga0119955_1005429

Overview

Basic Information

• Taxon OID: 3300012006
• Scaffold ID: Ga0119955_1005429
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5368
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014838	Metagenome / Metatranscriptome	259	Y
F020529	Metagenome / Metatranscriptome	223	Y
F022636	Metagenome / Metatranscriptome	213	N
F041152	Metagenome / Metatranscriptome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119955_10054292	F041152	AGGA	MNIVDYIVKNWDTLPKSCFDDDRIVIFKEIENDDWGYGHHSYEGIGVDKDGNVTWCYSSGCSCSGGPSLETKKDLKVFVVNEGIDLNVDPSTINFGSLQVEFNSY*
Ga0119955_10054294	F020529	AGGAG	MFSNKNIVKYCAKYFVLLTVGAYIFNTSVIFINQKSDVANLIGSALFAGLFVGTLLILKSDVTKLVKNINKTENKENE*
Ga0119955_10054295	F022636	N/A	MSTYRRATLQDLAKLGYVPNAQKYSEHIAFAKKYYPPEATTMVMSIHSEYNDSTYDNSFQYIIVYDTEGNELPPLKKTAKECREHWTTEYLPIPNTSHGHYGASESDEPLEDVVIPLTSEVPELYIKEN*
Ga0119955_10054296	F014838	N/A	MKESLKKIEELKNQLNTVKSELQNEFKAELKKIFVDNPTLDSIEMYLNNHEFNDGGATSFYIGYEDLKIVVEGEEVEREWDNATKEYKPNPVLESLIELFGDVQCIHEDLYGDEYEHLSITREDVLKY*