Scaffold Ga0119955_1001702

Overview

Basic Information

• Taxon OID: 3300012006
• Scaffold ID: Ga0119955_1001702
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10945
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (88.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025215	Metagenome	202	Y
F030660	Metagenome	184	Y
F043220	Metagenome	156	Y
F073073	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119955_100170216	F073073	GAG	MGKYMISSDGKTSTGFTKSIILNDGTNQYSGRLHWDSNDGYSMAWDTQQPPEADRPEFEYILDCITDLED*
Ga0119955_100170217	F025215	N/A	MTRKDSMKLKVHHPSGDVIAEVYDFSAGALLMSLYGEGSHISYKGKALWREGIDGEGAESYDTTSMTIDSRLIEMGVQLDG*
Ga0119955_100170220	F043220	GAG	VSKSNVDYANEIILTLTRDELETVRESLRQFSIHNTRQGFEARAKYADDLRDKIVNIILDSVQRRVDKAKELA*
Ga0119955_100170222	F030660	AGG	VSGDDIALDFMTEQEIAEIMATEDIFQVDMTNIDDLLEDVATDSDYE*