Scaffold Ga0119955

Basic Information
Taxon OID	3300012006 Open in IMG/M
Scaffold ID	Ga0119955_1001318 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Institute of Technology
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012006 Open in IMG/M

Scaffold ID

Ga0119955_1001318 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Georgia Institute of Technology

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12634
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (21.62%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

12634

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (21.62%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.21	Long. (^o)	-83.96	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.21

Long. (^o)

-83.96

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033036	Metagenome	178	N
F035766	Metagenome	171	Y
F072276	Metagenome	121	Y
F072338	Metagenome	121	N
F078709	Metagenome	116	N
F092046	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119955_100131811	F072276	N/A	MGSTLIEASTKKRFASLFTSLEDYRPTEERVLVFKDREDSPNFLVLKYVRDEEGKIVQRGTLEEVNEEEFKREHAPHADWDKTTLSEYDKKFQDWRSSSLMQKLEQLGEDDL*
Ga0119955_100131820	F092046	N/A	MITLTRDQTTNGNGSFSLVVAGGKKFIVPRWIEVPMNIEMEDIEVEALPELPRVEIPEDREWTFIGSKGNKYTVARKGGAFTCTCPASMFQKFKDCKHITEAKSAA*
Ga0119955_100131825	F078709	N/A	MNTDLLKTTLVISNVFNGERREKTVLFINEELAYKKAERISEENPDCVVSISSKEGMFFYLFKPLNMTKELELVSEGKMDTIEYILKWTGLSANLQTEKKTKPRRKKPGRAPSIENFQQAAGV*
Ga0119955_100131828	F035766	N/A	MTTTQKFKVLGVEQGITITRPFNSEMYNHNDKVREMQNEAVIAALEGLRESEDEELIEKAAKACSGYGYGDGYDSNDMIDDAIKNVEISANNWMKDEIWPDFLRLGLVQPLDTDYVGYKKL*
Ga0119955_100131829	F072338	AGG	MKRVQFKIGDIVGFKGRGLGFGRIVSISLRDKQEPIYHIELLAGDMLVATHGEYIEKLSPEDLELVQSLHSIGNL*
Ga0119955_10013183	F033036	N/A	MNYEIEDIQGLMNDLSTVGLSRKSLVFKTHYGFGEDLKGVNDGVTPLYITNEGADLMHEAKFGRRIKETTFAIIWSNWEAVPGRSWTETPLPAADLVESGLYRVGLFQSSPRMHFPGELPPERVKMAYEILLDQILKVKFDEE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0119955_1001318

Overview

Ecosystem & Geography

Associated Families

Sequences