Scaffold Ga0119955_1000774

Overview

Basic Information

• Taxon OID: 3300012006
• Scaffold ID: Ga0119955_1000774
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17074
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (21.43%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001808	Metagenome / Metatranscriptome	631	Y
F003327	Metagenome / Metatranscriptome	494	Y
F004234	Metagenome / Metatranscriptome	447	Y
F019928	Metagenome / Metatranscriptome	227	Y
F034842	Metagenome	173	Y
F071222	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119955_100077413	F019928	N/A	MKHSGVLSIIVFSTGYLTGISLLFEPAIYLKLAGATVIGYLTFILALQWEGQE*
Ga0119955_100077416	F001808	N/A	MMRYLAIILLLSSCSAQYHLNKAIKKGYKCEETGDTIRIMSVDSIPVIIHDSIVWEKFITTKDTIIKYKTTYVPRTRYQERLAYKLKVKTIYKDRIVEKAQAKATRPKTRGNLSLLFVGVGIGLLLSYLFKFTKDKYLL*
Ga0119955_100077418	F071222	N/A	MDKEQILKIIFTEEASLYDQAKEFQEAFGSADEATQRIVTKWIAITNLIEKINEKTN*
Ga0119955_100077420	F004234	N/A	MNFIDLYKNGNQYISNWTTDYDSDVYIAGTIEPFTYNATETDEEYMSLFILSDANLNLLKSKL*
Ga0119955_100077422	F003327	N/A	MTEFTQLAIEVQDAIANGDYTHQKYLRFREWYFQNYEGTKRNANRDFAMFDLMYGLDVPIKNDDNEDI*
Ga0119955_10007743	F034842	N/A	MISYQSIVDKITAFYDNHAQVKKVGSDFKEQMVNFATKDEKYPLVYVVPTGVTPYQNVSIFNIELYCFDIIQMDRANITTILSDTQQILQDLYLEFTFSDDYDFDIDGQPTFIPLNNDLLDYAAGWQMNLSVVIPSWTNCPIPKKIYTAYSQALQWDSIPLQNSIIFFCNGVQWDVQTGIASGEIGAFVAMCNANLQGSDFTQYGTYFDNGDNRVRLEMPYHVYNTFCPNGEVTLEITAI