Scaffold Ga0119955_1000509

Overview

Basic Information

• Taxon OID: 3300012006
• Scaffold ID: Ga0119955_1000509
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21186
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (72.41%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Associated Families: 15

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000311	Metagenome / Metatranscriptome	1326	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000473	Metagenome / Metatranscriptome	1097	Y
F000868	Metagenome / Metatranscriptome	853	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F003422	Metagenome / Metatranscriptome	487	Y
F005741	Metagenome / Metatranscriptome	391	Y
F012975	Metagenome / Metatranscriptome	275	Y
F013527	Metagenome / Metatranscriptome	270	Y
F026561	Metagenome / Metatranscriptome	197	Y
F074872	Metagenome / Metatranscriptome	119	Y
F076101	Metagenome / Metatranscriptome	118	Y
F077310	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119955_10005091	F076101	AGGA	MYKITLAYDGNAPHWQKDYENEFEAWKDFFAFVDWGFADKFSTVNIYNSEMKCFTKIFYREERKVVEVK*
Ga0119955_100050910	F005741	AGG	MANRFRIEIYDANKQNDLTIYSEQGIDKEYLTELVFSNLRRFNGTVRAYVFDSLKKKKTTAMFLDEEIVDSTNAKTNLTTAKQLNLI*
Ga0119955_100050913	F003422	N/A	MTNELVSSVYTFVCDPDECDSLIQLTSSDGFGFPSGVTELTCPCGRKTTLVSVEHATIAPSTQTKEEKMEETTTPAVTVPDTYNANLLVTYKVIHGYSDATYETDKVASIEWSLHNGRQSQKQVNMYLSKIDSVKDIITEAYADSDDQDTLRSIAEALDIELTRDVEWSATIEVSGTIQLDLLADSDTDIESEIYDNLYVESQNGNIEIVDTEVTNVREN*
Ga0119955_100050914	F000311	N/A	MYFELTAPDRLSMEMAYWEAQITGLDPEAMTPLTFNIGTGSIEKVSRLRDKFNLVESYMADQEPTGYLRG*
Ga0119955_100050915	F001043	GAGG	MSDYKDGFADGYKFAREEITEKLAEIDINDIDSWILARLSDMIEGGQL*
Ga0119955_100050917	F001125	AGGCGG	MGDRANFGFKQSSGETIVLYGHWAGYQMLSKLSHAVEQARPRWTDESYATRICISQLVGEDWNSETGWGLSVNRILDNEHKIPVIDWSAQTFSLHEELDGPPIFTMDLNAFCSKYSELASV*
Ga0119955_100050919	F000868	AGGCGG	MSFLENENQMVIDAIYSEIGEQLVEDWVNSNLDEGQMYADYRFAEMSSDNYIKGRFNQFYDLNPDDQYYLEWDEEA*
Ga0119955_10005092	F013527	AGG	MKTFEFLTYINVEAENYDEAIDVFQFQLKYGMNKDNVYVADIKDLELA*
Ga0119955_100050923	F000263	AGG	MNSEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLMAEQELADAIEREEESEEAMDSMVRTECEGALDALVALYELTYQLSFAIGARDEA*
Ga0119955_100050925	F000441	AGGAGG	MSDGYLNEQLDKAQKLLWGGSETENIEAHNIIAKLIKDRIEQTNLM*
Ga0119955_100050936	F026561	GGA	MSMDGTGMTPPPQSSPAGAVNSTEVGRKKPHQGKLRSGLKVDTNRHGIRRETSLDPKPPRKVGRKKI*
Ga0119955_100050947	F077310	N/A	MPLDANYIVVVISASAVSGIGTALVVGRIEAKREKIRKTEREQDALKIELKDLQIKLYQLEKDLNEWREKYYNAIQELISVKAELEESLIKLSLIDLELHTHDD*
Ga0119955_100050950	F000473	AGGA	MASDKNHFKYGINQWTGEPAKPVFYTPEMAKRVREIPQPVLLLMDVAMYPDFIGIKLYEDNFMQFDGSSKERVIDYVGKVKKLIESYGTRCELVGVPSERVL*
Ga0119955_100050952	F012975	AGG	MLHLTLKGVEIFIERSKTKSQESYWDNYDLMIWKKDSGGFSSVKGMFRKDSWGIADRISVNEQGVWKLPAKYVKHFK*
Ga0119955_10005098	F074872	AGGGGG	MSALYVTINPYKKGSKMTVNGYTYKVGDLFTTLKSKKTGVIKEIIPNASGSVRVLLEMPTKETRWTTVSNSALV*