Scaffold Ga0119955_1000451

Overview

Basic Information

• Taxon OID: 3300012006
• Scaffold ID: Ga0119955_1000451
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22756
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (27.27%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001055	Metagenome / Metatranscriptome	791	Y
F001298	Metagenome / Metatranscriptome	727	Y
F001338	Metagenome / Metatranscriptome	719	Y
F001725	Metagenome / Metatranscriptome	645	Y
F001780	Metagenome / Metatranscriptome	635	Y
F002413	Metagenome / Metatranscriptome	561	Y
F004790	Metagenome / Metatranscriptome	423	Y
F006659	Metagenome / Metatranscriptome	367	Y
F017613	Metagenome / Metatranscriptome	239	Y
F026553	Metagenome	197	Y
F074555	Metagenome	119	Y
F083898	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119955_100045110	F002413	GAG	MTDEAPLPMSAPTLVLISGFARAGKDTLATGLLEWSTRAAEHINFADALKEAGNHFMDYLGLDGNFLNEDFKVENRDALVQMGRFARRLDQDVFARHFANWVPVMKHHDSVSPETVVCSDWRYINELRVCQDILWEKGWKVRTVYVSTTGVGPANDEELDSIAEIRASHSFDQEYIFKPNARQQIMNEGRLLAKSWRL*
Ga0119955_100045111	F004790	N/A	METLTLETLAWARKVGLPPDRVAFLLACPKYTVSKGHRKSDRVITDNPNHHLQRLGDCYWFRLRRRGTDIVENIGHDLLTARKRRDEMLAAFDSGKAIPHVNIR*
Ga0119955_100045115	F026553	GGAG	MEGIRAKAIAVAKTAKDEKNQRIREAMSTWPNTLDTATLRGYILKDFNYTGKMSSLIWRMRRHGMMEFKADGLWHNLCNLPAE*
Ga0119955_100045116	F001780	GAG	VTKAATINDLTAPTAEAKSFDAWFFAQPKKVQEKMRESGVLPYREMVQSRHVFCIDANHPKWAFNPTADEHRTEVDSFISRDHVGVMLGAFMDAIAQSDSMHFRRHVELIRWALSLPGCLDSRTIARMYGRSHIWAQKRARQIRSTVNGDACGLFPHINSRRDKHKMPKR*
Ga0119955_100045123	F017613	N/A	MANSITAAPSVLAAGVLSALQNKLPVLSGISSVFSARPGSAGMSITVPLIGTSTASTFGAGGYLTGDDATVTQTAVSLGHYKISSRFTPSNLKDYGADFFVANFTQTASIGLAQKVMDLINTQVTNANYSVSTVSGAALSYLELVGVQKTLDDAKAPSPRYAVLNSTYISDLRQDTTIVGNNVLGASIIRDGDLGIIAGARIYQFANLATNSESLAGWVAGPDAIAFASALPDSEGIPGFEVANAVDAGTGLGVQVLVGMEQSGYLNVTCTLLAGCAVGRSTSLVRLKTA*
Ga0119955_100045124	F001298	AGG	MSLYADFLADAKEMIADFGVAGTANSGAITFQCLISDPAVMTVLEAGGYCERTQYSVRMPAVTASWTLPDGSTGSSAALLSAGVPIASLGQGKKIVAGGKTVRITTQTYKPASAWITLVVIDDNQ*
Ga0119955_100045127	F001055	N/A	MGTKSIRHIVESTVATYLSTQTGLTTVTFLTGDSAATQTLPKAVVLCESARAPSDLPEGEGNFSCSVRITLFSNADDTTLADHRLRCAALSGNMRDLTSIKAAFTATGDATCYDVTMQSEDEGIDERSWATAFTFDILTVFPA*
Ga0119955_100045128	F001725	GAG	MAAISNGTTCIYGIANGTFGNLFVQSYSLSSSFNAEATVVDETGLTKTHRLDDRKSELTVEGIAKTSVVPILGASLSFTLNTASAYPSGSASVSFSGTITKIDDKGQNKGFTSVSITAIDYEGISPA*
Ga0119955_10004513	F006659	N/A	MKKDLKSPSEYRIIADSSYIVLPDQKVARLLTPTVRNGVTYYNLFVPDYTRMSLADIEATIKAGEVTKSAEAK*
Ga0119955_100045132	F083898	N/A	MSIQPGNGYTFASSGQGTSLNIDKPWTPPIGDALVFAPQVAIPASTYLPEQLVYGQGQGARPSPFECQIVSINGERFLQIAVGAINYTSSLMPEIYYGNDTRIMQAYANKVQICPSGMRTNGDLYPIYPDGDPTYSLTWWMEDGGGYKLSDSNSPLTLYAFKWDVAVGVSPFSESSVVNTGLPTLALIADSNSTDQNKIAVDPSPSTYVQTMNVQKMTGYDAASTGLDEDWGHGHTSWLNPRKLGYSYKAIAAITAESNSFSMVGSIERVAIPLIQNQVQHISLVGKASGGAAYISCGTHTSVIPFPVTTFWSGSVPVYSDELTLAACLNSIPDITITVDSVPLVIPIAGNVEVSKTSAGSYYVTFCNNLSGINLPQLTFNTSSVTHYAYDFKITQYHTGSIDLITPTQTGMVQLRNVIGEAETDDPYNVNETAEWDQIANKAQCVACTDFSGDVITGGMSNMTGATAIPVNYDGGEITSEPSTPPFTVYPGSEDGKWKVQPGTLNDYVPDNMESEITASSGMIYLKISNTSGAYPGDTLTIETAASTPVDTDDYGYITLAEIVAGVDEAPPTVNQFVTGSLWSQRHKFTSPNTASYFFYRV*
Ga0119955_10004515	F074555	N/A	MSQPDPFAFFNDAVKAANAQNELLAAQARIKQLEERLEAMREAGDAIWYCVRHATEVAPQEIVEAIEDWQEARNNA*
Ga0119955_10004519	F001338	N/A	MTTENNDRPVLTSISTNGTYKLKLIKPKFEKVKVWEDGTCSARLFFVDHNGFCLSKNFSTKYGKALAMLVGKYSGKFTEEIRLDATAAEYLQYLEPACGQTILVGVECEANGEYNGKPQFKYKMTYPKGSQKPVVKDALPDNPPF*