Scaffold Ga0119955_1000403

Overview

Basic Information

• Taxon OID: 3300012006
• Scaffold ID: Ga0119955_1000403
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24082
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (88.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001562	Metagenome / Metatranscriptome	670	Y
F004840	Metagenome / Metatranscriptome	421	Y
F014142	Metagenome / Metatranscriptome	265	Y
F046368	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119955_100040310	F046368	GGA	VSKQFKTPIAPPALSSDPTGQVAGEIYYNTVAGALKIFNGSTWSLLTGSGGGGETTTSIQVLGSAPTSPTVGTIYFDTAEQIIKTYNGYIWYDVAGPKELLDHVHYTDGYVRTVDYGNYVANNNYIVSMDGGLANTNYAIVGNDDIFDGGNA*
Ga0119955_100040323	F014142	AGGAGG	MTNLVLEPNHPMSSSNTGDVSIFRLANGNYISRMAYVQMVASEGLISHRYLTPSESMWAISHTA*
Ga0119955_100040328	F001562	GGCGG	MKSQLEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPVAFAIGLVEHEDYLAEMEDES*
Ga0119955_100040333	F004840	AGGA	MYKITSAYDSNAPHWEQSYENEFGAWENFFLFTDWGFADEYCTVNLYTPTGKCHTRIFYREGRKVVTK*