Scaffold Ga0119955

Basic Information
Taxon OID	3300012006 Open in IMG/M
Scaffold ID	Ga0119955_1000278 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Institute of Technology
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012006 Open in IMG/M

Scaffold ID

Ga0119955_1000278 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Georgia Institute of Technology

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29922
Total Scaffold Genes	55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (12.73%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

29922

Total Scaffold Genes

55 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (12.73%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.21	Long. (^o)	-83.96	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.21

Long. (^o)

-83.96

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001808	Metagenome / Metatranscriptome	631	Y
F005814	Metagenome	389	Y
F006463	Metagenome / Metatranscriptome	372	N
F009004	Metagenome / Metatranscriptome	324	Y
F009958	Metagenome / Metatranscriptome	310	Y
F014573	Metagenome / Metatranscriptome	262	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119955_100027815	F005814	N/A	MELDLLSSRINLNHTCLKLQVSIDEIKTKHPNRTDLISSMEQSLHEIKKAMVVYDTLEKEFRTARQMNFNLERLNLELKQDVKDLKKIIEFNNAEL*
Ga0119955_10002782	F001808	N/A	MGKLFILIISILLYSCSAQYHLNKAIKKGYVCEETGDTIRITTLDSIPVIINDTIVWEKFISTKDTIIKYKNVYVPKTRIQLKREYKIKVKTIYKDKVVEKAEARAEGKKNRPKGNLNLLFVGVGIGLLLSWLWKNGIKSII*
Ga0119955_100027826	F014573	N/A	MHIQDEQLRSELKKILAFKKRNSIVKEIQDKGNKFHFFQLTNFLEGKDVSLSTLKKIDYFVNR*
Ga0119955_10002785	F009004	N/A	MKTEFNKVIDFLETQQQEDKLNTNQLHLIIQTLVTFLNKEQVQEVENLFNQFKK*
Ga0119955_10002787	F009958	N/A	MENRNLEFWNKGWELTYEFTGWTYSIAGTWEFNDYDEVSEYAFIELDVEISQKWLTETDDNLQPHVLGVRILEDLRLEMQEAINSDLQHYNFWEWKASNDESNYNFYHEL*
Ga0119955_10002788	F006463	N/A	MKSGTIYEQLDWWQRQWRGSFDLHLYLEICRIKKNENQKFKPMKRFKATFKTWAYVGAPVKLETRIVEAYDFQHVKNLIQKNDDIIIEIKQIEK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0119955_1000278

Overview

Ecosystem & Geography

Associated Families

Sequences