Scaffold Ga0119955_1000152

Overview

Basic Information

• Taxon OID: 3300012006
• Scaffold ID: Ga0119955_1000152
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40666
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (86.21%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001599	Metagenome / Metatranscriptome	665	Y
F006544	Metagenome / Metatranscriptome	370	Y
F026858	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119955_100015218	F001599	GGA	MGQETISVAWCDNGMVDGKFTQGMVDVLLHSGLKFETSIRSQGNQIGRQRETIVKYWYEQNKSDWLLWLDSDVVVSPEKFKLLWDNRDAEKRPLLTGVYFTTDTPEEPLMIPMPTLFEFAEQDGVVGIKRLHPMPQNKFMQVGAAGMGFVLMHRNVITRILEAVPDAPIFTEIGVNKSFMGEDIYFFALCDKADVPVWCHTGATVPHMKRFSFDEHYYNAFNGQPEKPKSKLITPGYMNKKG*
Ga0119955_10001524	F006544	AGTAGG	MTTLVAIQGDGWSVLGCDSRSSDESGRPMDMATHKIIENNGILIAGSGAGRGSNILQFGWKAPKPTAGANLDIWVTQTFIPAMRKAFVDAGYDMKEDGEAAGHDSSFLISVKGVIYPIFEDYSWDRDIRGIYYGGSGGDVALGALEALGVQRLTKADSVEKAVRKAIAIAAQWDIYTAEPIITKIHYSK*
Ga0119955_100015255	F026858	AGAAGG	VSADTNLLLDLTPREVEVIRMALRVQQDTHKRNDFKVLVIEVETLRSKIADAILDLRQALV*