Scaffold Ga0119955_1000134

Overview

Basic Information

• Taxon OID: 3300012006
• Scaffold ID: Ga0119955_1000134
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42968
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004448	Metagenome / Metatranscriptome	437	Y
F010984	Metagenome	296	Y
F015972	Metagenome / Metatranscriptome	250	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119955_100013410	F015972	AGGAGG	MATKGVVAPRLPLAPVEYDQRFMDVLLGILRQYFNALDNPGPILAATERTTNPTEVISALSCAKPSTTGAPTISLPTQADFALLRSGDVYYDTSGGVATSYPLRIKA*
Ga0119955_100013425	F004448	AGGAG	MTKRETIVAFIKDMLRPRTLKEIIDIEMRDATISKMQAEKSLEYAMSVVDYNRQRIRRLQEKLLEIGEKDA*
Ga0119955_10001345	F010984	GGA	VDPFSALLIAQTAVGFIKQGCAFLHEGRMELEGAKKTAEQVIGDVKAIKGIFDWFIGLFVSKPAAEAPKPVAKAKAKPATKQQQSYEELELKLISEIGANLGVLFDTQQSINNYYIELEETSKTNYDPTQNTSQKAIERALIELQMEKLMEQTREVMVYAPPELKDLYSRFLKMHAKIEQEQEWARSEMIRGARLARWKKEQDEIRVIELTSGVIAVTFISLFFGWLMWEIRNLSGGF*