Scaffold Ga0120163_1004083

Overview

Basic Information

• Taxon OID: 3300012003
• Scaffold ID: Ga0120163_1004083
• Source Dataset Name: Permafrost microbial communities from Nunavut, Canada - A20_80cm_0.25M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6655
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Axel Heiberg Island, Nunavut
• Coordinates
  • Depth (m): .8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022478	Metagenome / Metatranscriptome	214	Y
F048609	Metagenome / Metatranscriptome	148	Y
F106019	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120163_10040832	F048609	GGA	VADDQEPEIDIEALQEQLASFSVEQFLISAASTIASLAYAKLEREDLPQARKAIDALAVLAPLLEGDLAADLGLALTKLQVAYAEAASA*
Ga0120163_10040835	F022478	N/A	VENRVLIFAEALDVAAEGAVWYARRIGGGTFEAVHVPSKTTDTGIHARWFDFTGGEPRLDVRPPGSDPTEVVLREVARLRGGRDDVVVTVVLPEQFSKRSLLAAAQRAQFRLKLRLLTEPGVVVADLPAVTSERRPEGHVPDTLILRVLAGEPDALTRRAIEYAQELQGVDELRALHFGPREWDDAELGIPVDDAPLTGRLGDSILVEVRKLTADPATAVNVVLPERIDTGLRRLRGPRAIAIKRCLLFEPHVILSSVPTRA*
Ga0120163_10040837	F106019	GGAG	MYRTLVRTIAVVMIVMGIAMLSLTLRHGLGVGVILGLLFIGAGVGRLLMLRRKT*