Scaffold Ga0119951_1059453

Overview

Basic Information

• Taxon OID: 3300012000
• Scaffold ID: Ga0119951_1059453
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1047
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013878	Metagenome / Metatranscriptome	267	Y
F082234	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_10594531	F082234	GAGG	MFIDKSADKLKEHFKYGINQWTGEPNKPVFYTEEMKKRVHEIQKPSMLLMDIVMYPDFLALRL
Ga0119951_10594533	F013878	AGG	MLNLTELGVEVFIKKAKNISPFWDNYDLIIWKKDSNGFTNIKGMFRENAWGIAEKISVNDKGLWKLPTKYVRHFK*