Scaffold Ga0119951_1046429

Overview

Basic Information

• Taxon OID: 3300012000
• Scaffold ID: Ga0119951_1046429
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1272
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013084	Metagenome	274	Y
F018927	Metagenome	232	Y
F043399	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_10464292	F043399	N/A	MLLADYPIVIWTIVKKNNNYILLDSCGIEVFRRKENRKKEIYQYCEDNGIDYQEEF*
Ga0119951_10464293	F018927	AGG	MNKHIEITRHLTVDGTTTYYVIEKSKNSSSIIWNGTCKQAAYQVAYRNARKENTPLYDTIYKAEFDRNGVKHIIPIGNELLEVNN*
Ga0119951_10464294	F013084	N/A	MGIMSILGLMEETKNTVLHRGHNVKNWLVLGNDCYALECSDCKKTVMIKENPLPNEIKVSGEALAVNCVKPVKEKKLRKK*