Scaffold Ga0119951_1041274

Overview

Basic Information

• Taxon OID: 3300012000
• Scaffold ID: Ga0119951_1041274
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1394
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004583	Metagenome / Metatranscriptome	432	Y
F006220	Metagenome	378	Y
F007310	Metagenome	353	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_10412741	F007310	N/A	AVYWNNTERWFNHHHYELLIEDITGFDLKQSLCEQSVKYMAKRLKDTPYHRTFKSKYSIYSDEYNALVEKFNDQANNNGKIEVA*
Ga0119951_10412743	F006220	N/A	MKKFKKFVEELAIASGTEMMRASQMRPTSFKDKSKYTRKTKHKNRQDKNSGDSFLQSL*
Ga0119951_10412744	F004583	AGGAG	MKSTRNSDRLREILVSTRHQIVALKDIQIDLLRYDSKVANQIATQISALEEVYKHQLSLVDIAEKIEPKRAGWFSGQIKTKEDRLANIMD*