NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119951_1040765

Scaffold Ga0119951_1040765


Overview

Basic Information
Taxon OID3300012000 Open in IMG/M
Scaffold IDGa0119951_1040765 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1407
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026209Metagenome / Metatranscriptome198Y
F080837Metagenome / Metatranscriptome114N
F102437Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0119951_10407652F102437GGAGMTSKLRPLEDIVLSVREPREIKGSLVCAIQDSDIPTMDKRKLIINIDRCMTINDLQRLFYNALLKYEGHGVL*
Ga0119951_10407653F026209N/AMMKNRTVTYEIYDEDGEWRNVTEPAIGGIKWGKREQIGDEVQSAYYDHTYYKVPFYGPCDLGRMQRALYRLYPARFNKFGGYTTVSKVEKLDDEHIKVEMCYHIGD*
Ga0119951_10407655F080837N/ASNFLHNRSMMNKEQGNKLKHEFFPKMMTTQVLKPYLKEAKRVGYTIEGSVKDGYIRVITDECEQHPAGEVVMRGVKKPYANIWIMGFNKLYWQEPTLEEMLGEKNK*

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