Basic Information | |
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Taxon OID | 3300012000 Open in IMG/M |
Scaffold ID | Ga0119951_1037520 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Institute of Technology |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1499 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.21 | Long. (o) | -83.96 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002398 | Metagenome / Metatranscriptome | 563 | Y |
F002406 | Metagenome | 562 | Y |
F009266 | Metagenome / Metatranscriptome | 320 | Y |
F010618 | Metagenome | 301 | N |
F060914 | Metagenome | 132 | N |
Protein ID | Family | RBS | Sequence |
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Ga0119951_10375201 | F009266 | AGGA | MTNKERKILDKEIQYLCEQQDRVKAIREYTNINPHYTFLKEVETIESLYKWVLENRKKEKSTYFSCGTSGWYVVYLRDKKKYKEGEDFRIKIFHTFVWTDNLE* |
Ga0119951_10375202 | F002398 | AGGA | MIPLISIFLLTSLDPIKNFVSLKTYISENAKIHCGVYFINEEIPDYPRVNVIEKNKFDFFAYLDTIGIEHSQVGSYYFFYRKPK* |
Ga0119951_10375203 | F060914 | AGCAG | LKRLIKVRSDISASIYPIQLFQVDDYFTAEEDGVELFRYKSQHLCSIKAKELIRKRKNEQNELNIQKIKELKEQGILYDTLN* |
Ga0119951_10375205 | F002406 | N/A | MENLKWIRAMSDRLRDELSKEYDDDTKDLIIRAFMQGLYQQPSIVEELKSSSLIESDYFEDNDETDIHG* |
Ga0119951_10375206 | F010618 | GAG | MTLQELIAKLQELEKKYEMYSQDIEVVLAIHSENEFNPEVQLDYIDEVVHPALDTHSGYLCRIVLCGEYYQQD* |
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