Scaffold Ga0119951_1037520

Overview

Basic Information

• Taxon OID: 3300012000
• Scaffold ID: Ga0119951_1037520
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1499
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F002406	Metagenome	562	Y
F009266	Metagenome / Metatranscriptome	320	Y
F010618	Metagenome	301	N
F060914	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_10375201	F009266	AGGA	MTNKERKILDKEIQYLCEQQDRVKAIREYTNINPHYTFLKEVETIESLYKWVLENRKKEKSTYFSCGTSGWYVVYLRDKKKYKEGEDFRIKIFHTFVWTDNLE*
Ga0119951_10375202	F002398	AGGA	MIPLISIFLLTSLDPIKNFVSLKTYISENAKIHCGVYFINEEIPDYPRVNVIEKNKFDFFAYLDTIGIEHSQVGSYYFFYRKPK*
Ga0119951_10375203	F060914	AGCAG	LKRLIKVRSDISASIYPIQLFQVDDYFTAEEDGVELFRYKSQHLCSIKAKELIRKRKNEQNELNIQKIKELKEQGILYDTLN*
Ga0119951_10375205	F002406	N/A	MENLKWIRAMSDRLRDELSKEYDDDTKDLIIRAFMQGLYQQPSIVEELKSSSLIESDYFEDNDETDIHG*
Ga0119951_10375206	F010618	GAG	MTLQELIAKLQELEKKYEMYSQDIEVVLAIHSENEFNPEVQLDYIDEVVHPALDTHSGYLCRIVLCGEYYQQD*