Basic Information | |
---|---|
Taxon OID | 3300012000 Open in IMG/M |
Scaffold ID | Ga0119951_1024610 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Institute of Technology |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2075 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria → Candidatus Parcubacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.21 | Long. (o) | -83.96 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F010317 | Metagenome / Metatranscriptome | 305 | Y |
F047003 | Metagenome / Metatranscriptome | 150 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0119951_10246101 | F047003 | N/A | MGCDIHLYIEYKSKDGYDPAWQGFGGNINPGRNYAMFALMADVRNYYSDGKLPVLVERRGMPDDAGYTATDDNRIYISETESDDYVSMETAKRWVKSGSSKFINDKDGNPIWVTNPDAHSHSWLTTSEFESVINKYLELEAGWHKVRVEEHNKMVKEENIQPDSWACAPPSMVDEPEYQV |
Ga0119951_10246105 | F010317 | N/A | ARSMEEHIMGKPNDNYSSIPIEYNLEGVLSYDIEVGKPVVVGRTKRNGVEAYGVFSTSTVTEVGNNYFKTRNSVYSYKFL* |
⦗Top⦘ |