NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119951_1023865

Scaffold Ga0119951_1023865


Overview

Basic Information
Taxon OID3300012000 Open in IMG/M
Scaffold IDGa0119951_1023865 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2122
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F091274Metagenome / Metatranscriptome107Y
F093196Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0119951_10238652F093196N/AMNNKPYIGNFVPYIVGLCLAGSIFYTVYSPHASMVKQQIDNHGMDFEYVTDDGSCFTQRAEPIGHESHKYILSLNTPAKPTNAEEPLYVMVGYTMKQVRVRYRSNTLTSNNL*
Ga0119951_10238653F091274AGGMEYVSLSQAIKAAADLNTPSTEYLNNFLPAYRKYHKRQNVRRAVCKIGSGLAVFIVACLCYASINNHNKLDIDTASGGEMAQHNTHGKHVVFEGNVQEVTNFIKEHVKEKTQTLNLRDHFQADVWGVHVEGEEKFRFYYQCLGHGRYSVFVINE*

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