Scaffold Ga0119951_1020940

Overview

Basic Information

• Taxon OID: 3300012000
• Scaffold ID: Ga0119951_1020940
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2339
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046324	Metagenome / Metatranscriptome	151	N
F048935	Metagenome / Metatranscriptome	147	Y
F075864	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_10209401	F048935	N/A	MSKINKLNEQFKKATKAQKRVMIAQDVLAQLKTKRYVAESGCWVQANYNSAVPLADIKYKDSVQDLFAEKTIESCNVCALGGLFMSCTNFNNNTLLEELDDVSEDLGNLIDEEEKLSNKLNKIFSTSQLKLIEAYFEANGGYFRDYDEDDRIEAFYNKHPSDKKRLQLIMENIVENEGTFVPAKLKI*
Ga0119951_10209402	F046324	N/A	MTCLKVKKEAKLEECAVPWSGDALSVCNKCRMSIWDFDFDEFHIMNDGEPFIN*
Ga0119951_10209408	F075864	GAG	MTPDPNFWREIPQEVKDAALLLGNYFKKQGIDNWALYDVCSRKSVDNLENQVKNLETWKNKQVNGFID*