Scaffold Ga0119951_1020480

Overview

Basic Information

• Taxon OID: 3300012000
• Scaffold ID: Ga0119951_1020480
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2375
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004760	Metagenome / Metatranscriptome	424	N
F010603	Metagenome / Metatranscriptome	301	Y
F012569	Metagenome / Metatranscriptome	279	N
F020886	Metagenome / Metatranscriptome	221	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_10204802	F020886	N/A	MSLDEVADLREKVSSVSERLVRMEERQMTLYSMVERSLAFHGDVANRLGALEHLRTKVLAVAGLIGLACSMAWDVLKNRLSN*
Ga0119951_10204804	F012569	N/A	MSRALDKFQGQYGFSVGTQGTAPAGYWAIQMLADTTFSAISGKYDGTLTGVTIGSGNIIYGEFNSYTAGTGRVIGYIAG*
Ga0119951_10204805	F010603	AGGAG	MSDEFKRNPLKAKNRAIRINSTPFANVLEFTASSSGGTVNTVATAPASLNVTLNGTSYRIALHS*
Ga0119951_10204806	F004760	AGGA	MPIYQYEDSRNGKVVELEKAVAERDSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLFKGYYRQEQKLGSRFRSQYTPDSIKRATLRRKIK*