Basic Information | |
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Taxon OID | 3300012000 Open in IMG/M |
Scaffold ID | Ga0119951_1017579 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Institute of Technology |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2651 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.21 | Long. (o) | -83.96 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003112 | Metagenome / Metatranscriptome | 506 | N |
F010603 | Metagenome / Metatranscriptome | 301 | Y |
F086661 | Metagenome | 110 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0119951_10175791 | F010603 | N/A | ASNVRRLKGVNMAKEFVRSERKAKGKALRFDAQGFTNVFEITASSSGGTVNTVATAPASLNVTLNGTSYRIALHS* |
Ga0119951_10175795 | F086661 | AGG | MSKTVVKRLDGSVFVEDDRSLATAKEQNINYARTLASEAIQSAGLDEATQQNAALGIYPPERCEAIKSYIASCWNEYLRCKALILAAQTNDEADAVQFVAPPVPEGI* |
Ga0119951_10175796 | F003112 | GAG | MTRKEYACFKEALRFAGENNTVAKETKYIGKVKHLLSVNRSIKRIVEEGRDRDEIVDAVVHLAVALKYLEGKGRES* |
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