Scaffold Ga0119951_1013615

Overview

Basic Information

• Taxon OID: 3300012000
• Scaffold ID: Ga0119951_1013615
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3174
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005558	Metagenome	396	Y
F013279	Metagenome / Metatranscriptome	272	Y
F014590	Metagenome	261	Y
F023834	Metagenome	208	Y
F026864	Metagenome	196	Y
F055450	Metagenome / Metatranscriptome	138	Y
F068766	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_101361510	F068766	AGGAGG	MTEDNVIGFHSKNKLVNFYEIATEEGNAVWGGEDPHSAVQWLRKSPLNSRLLVSCWEAGEEDARLIIEPIDITKIVYAVLAGAQ*
Ga0119951_101361511	F055450	GGAGG	MTEASNKRLIGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKKTDEQEGKTWLDLSGNTVPVVGVRIRTADGRGAPVIKDHLDKGTDEGNDGGEA*
Ga0119951_101361512	F014590	GGAGG	VRTRHLQLVTHEHSVTIKTKSDVSSPCGPVRAGLTTSQITRDQALTELLNSLESVVASLNSKSFTALDTLDTAIQGVRVALYSTVTEEAGTDTL*
Ga0119951_101361513	F013279	AGGAG	MMYDYRCPDCKTELTIERSIHEEPREPSCFDCHIPMIRKWDAPSITFKGKGFYSTDK*
Ga0119951_10136155	F005558	AGGAGG	MTTDQDSMSWSELAQLTHATQVERFNWCICEDNEGQENPYNDCPKEAE*
Ga0119951_10136156	F026864	AGGAGG	MSEQEKMAQFVFTVVIAPANKQYDVELWDFAGDEPKQLATGGGSNWRTALGEALSKIELPTDKQEKTINDLVKEGVEDEGV*
Ga0119951_10136158	F023834	GAGG	MSEPTVDYWRAKAELCRDLAILQMNDEDLEKEAGMNLMRMTYALSMVDTFNEGGSDE*