Scaffold Ga0119951_1011713

Overview

Basic Information

• Taxon OID: 3300012000
• Scaffold ID: Ga0119951_1011713
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3530
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F035307	Metagenome	172	Y
F036123	Metagenome / Metatranscriptome	170	Y
F056615	Metagenome / Metatranscriptome	137	Y
F058150	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_10117131	F036123	N/A	TRENYRYDILGFTFTKEHPFVAMTSDDAQQIFDKEEGFRLATPKEVQEYYA*
Ga0119951_10117132	F058150	N/A	MEILVGSNSPVTHKVFWQGQLTDSDALPVVKVYDITEDPAISPAINPGTVLATLTPVKSEVDSGTYLVYIPLTYTNRQRQLRLNWSYTVGGVSAQKDHKIFVQTPYTDMSQSIDSLGLGSDYSDPNSKSYFELCNAERYARKLIEAYTGQQFYLYDDVQIAYGSGSDILPLPYKLSELHELYQNDILLLDTIHSINNWNYNTIISESGFGLRVNRANMLDNTVYTANGMIPPTINDTWGGSFSTGSTYRVQGRFGWEEVPDEVDLACIELMKDYFSKDKVWRNKYMKAVQTFDWQFEYNSSVYSGTGNLYADQLLLPYVINKMVVI*
Ga0119951_10117133	F056615	N/A	MYDLIDSFMPMFMDVYKQFDLQDSNTGAIKKEWQFDRTVPCSAKGIISNSSASRSGDKQVMSNKYLNDQILQVRTSEKLSLREKITNIRDSEGTVIWEELNFPTNTPTVFELMGITPMTDPLGGVVGYNSTVKRSENQTIGQ*
Ga0119951_10117134	F035307	GGA	LDNSSVLVTAASGLQKGMSGTSGTVLKDSIVAQVSAAIYYQAQVVSKITTNKQFQNKFQSVIFKQIEEDFGAYVDAQARMNPKSLHHVYEWKKVGNKTARLFKLKKVSTDGLNFKVTSSFIPSKASVPNTFGKRRHVFANKASVMEAGMPLVIRPKSAERLVFETNTGVVFMPKGVSVTVTRPGGGKATGRFQIAYAQFFTGNLVNLSIKRSGFQQLFNSSLTKAMKLPAGIKKVRYSFNPNTLNMQAEAAIASAFGGAV*
Ga0119951_10117135	F000258	GGAGG	MTDYKADIMLDVRKYLWDQLKANDIFTATDYYSDNIGQEIIPIIPVQQSPELNQFLSGKKHIVYDKIDLSFEDNWAISCEQILFTIYSTDVSEINEIRNLMSDLFRRMDDSARDANAFSGISKKFKFFSIFIADISPTAPSQELSGFLSADVILEVKYARHLDSVGRFL*