Basic Information | |
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Taxon OID | 3300012000 Open in IMG/M |
Scaffold ID | Ga0119951_1009055 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Institute of Technology |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4236 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.21 | Long. (o) | -83.96 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F005293 | Metagenome / Metatranscriptome | 405 | Y |
F006181 | Metagenome / Metatranscriptome | 379 | Y |
F019468 | Metagenome / Metatranscriptome | 229 | N |
F067662 | Metagenome / Metatranscriptome | 125 | N |
Protein ID | Family | RBS | Sequence |
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Ga0119951_10090553 | F067662 | N/A | MIPPSKTETIKTIAELKAYFVEVDELNRYNGVTAVRTTKEVATELLLDNVSIIRGGKIRYFQIKHIGLGVYDIKLREIDHINTSLVENWEKRVINNTQHF* |
Ga0119951_10090557 | F005293 | N/A | MVNDNIPFTPTRDDLIGYISDVFKEIHGMRPRPVWSELTYEQLDKWGRELAAEAVTYRKQEAIRNRIARGLRRAQQRAWVEKKRSYFTGSTFTIGNVVNF* |
Ga0119951_10090558 | F006181 | N/A | MKRNIVHIIYPDEFVYSYVMETDVSVENILEYVFSGWNHGSGVESELFLKTKNRSLSVNDIVGVNGKYYLCESFGWKEVTPQFVNELEEEVSNHPNRIQGAWFALNDVMYARKSKNNLELV* |
Ga0119951_10090559 | F019468 | N/A | MTIEKTYKLSIKDTAYFLTEEEVTKLYEQCRKALNIDNAYFPNYPPGVRKFDDDKTTPLNPTTPSIPYPYDTYPWYTPKHPNDTGHPYWTGPTTTCGTINAGEGICVMDTNWQTNLCNTVKSSNDINFISDDMAVHEDNQKWRSSVEKALDKLNANKKV* |
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