Scaffold Ga0119951_1008154

Overview

Basic Information

• Taxon OID: 3300012000
• Scaffold ID: Ga0119951_1008154
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4562
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012098	Metagenome / Metatranscriptome	283	Y
F016389	Metagenome / Metatranscriptome	247	Y
F019997	Metagenome / Metatranscriptome	226	Y
F030064	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_100815411	F012098	GAGG	MPKVYNIGPKHFVQLIDLPVVWGNKFIVRGWTQEIEEPFRTSEPFLVRLPKYKALAFGKWTGFKNEEEALKSALNTREVTYDDFTEEAGWTAPDSDRETSIYNLHPRFDSMDGAINVHDWQVYYRLAKESE*
Ga0119951_10081543	F019997	AGGAG	MTQAQLKAAAATYLRAAAASVLALYLAGQTDPKVLLNAAIAGLVGPLAKALNPKDASYGIVKK*
Ga0119951_10081544	F030064	AGGAG	MFFTTIGVVAGALISLGILLNPLRKKIKRWAEWMERFMRDWEGEEAEPGRDRVPGVMERLNRLDGELSNNGGSTTKDKVDNLYNNQGILMEAFVEMGERLISIENCLTNKETDA*
Ga0119951_10081548	F016389	AGAAGG	MPLIRKFAVQGHAIPSTAHTPRGPFPPEVMAQPEMAIDERHSDSLHPGLDDVRLFKCKECDEIVIEEELSTHECDE*