Basic Information | |
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Taxon OID | 3300012000 Open in IMG/M |
Scaffold ID | Ga0119951_1008154 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Institute of Technology |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4562 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (83.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.21 | Long. (o) | -83.96 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F012098 | Metagenome / Metatranscriptome | 283 | Y |
F016389 | Metagenome / Metatranscriptome | 247 | Y |
F019997 | Metagenome / Metatranscriptome | 226 | Y |
F030064 | Metagenome | 186 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0119951_100815411 | F012098 | GAGG | MPKVYNIGPKHFVQLIDLPVVWGNKFIVRGWTQEIEEPFRTSEPFLVRLPKYKALAFGKWTGFKNEEEALKSALNTREVTYDDFTEEAGWTAPDSDRETSIYNLHPRFDSMDGAINVHDWQVYYRLAKESE* |
Ga0119951_10081543 | F019997 | AGGAG | MTQAQLKAAAATYLRAAAASVLALYLAGQTDPKVLLNAAIAGLVGPLAKALNPKDASYGIVKK* |
Ga0119951_10081544 | F030064 | AGGAG | MFFTTIGVVAGALISLGILLNPLRKKIKRWAEWMERFMRDWEGEEAEPGRDRVPGVMERLNRLDGELSNNGGSTTKDKVDNLYNNQGILMEAFVEMGERLISIENCLTNKETDA* |
Ga0119951_10081548 | F016389 | AGAAGG | MPLIRKFAVQGHAIPSTAHTPRGPFPPEVMAQPEMAIDERHSDSLHPGLDDVRLFKCKECDEIVIEEELSTHECDE* |
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