Scaffold Ga0119951_1006270

Overview

Basic Information

• Taxon OID: 3300012000
• Scaffold ID: Ga0119951_1006270
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5484
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003456	Metagenome / Metatranscriptome	485	Y
F003784	Metagenome	468	Y
F013279	Metagenome / Metatranscriptome	272	Y
F016642	Metagenome	245	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_100627010	F003784	GGAGG	MYDDDRERVGHNVTDFAAYGLSHLTTGQAEPTDTHTPTTNPLIDHAAVTGYRAMGVTTEDLTSFIESFASLRAHRVKGVGHDQYSHAKGQKFESFTTSDTIRELIEELADASNYIDFLAIKLLNIQHTIDRVLPDCD*
Ga0119951_100627012	F013279	AGGAG	MMYDYRCPDCNTELTVERSIHEEPREPTCFDCHVSMIRKWDSPSVTFKGKGFYTTDK*
Ga0119951_10062705	F003456	N/A	MVNPNGRKGSQFETDVMKWLRKCGVMAERLTKAGAKDEGDIVTVIAGETYILELKNRATLSLPEFWREAEVEALNYATARGLGEVPLHYVIVKRRNAGIENAWVIQDLAQWIKEKQ*
Ga0119951_10062707	F016642	GAG	MLATERWLAKYGSVDRPNYAEGKKNGYLEHELLANVRANVSEWAVASVTDTAWNVPWYPNDLHPRRAKLPDVGINFEVRTVRTRDSIPFWSKDNGKILVGTKILDEDYYSQVEVYGWCNPEEYASATYRDETIGGWRVPVTELKEFK*