Scaffold Ga0119951

Basic Information
Taxon OID	3300012000 Open in IMG/M
Scaffold ID	Ga0119951_1005347 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Institute of Technology
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012000 Open in IMG/M

Scaffold ID

Ga0119951_1005347 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Georgia Institute of Technology

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6136
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (68.42%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6136

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (68.42%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.21	Long. (^o)	-83.96	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.21

Long. (^o)

-83.96

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F000852	Metagenome / Metatranscriptome	860	Y
F000868	Metagenome / Metatranscriptome	853	Y
F003422	Metagenome / Metatranscriptome	487	Y
F047059	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_100534711	F047059	N/A	MKLHLISLNQDLEDARNNEPLNEDEYWESDAFYMGAIDATEHLLSVATDIMNAPNERYE*
Ga0119951_100534717	F000852	GGA	MTTKREYLKQQGITVGARGRFSGAAKQALQEALTKGVTFTEEPKVNKAK*
Ga0119951_10053473	F003422	N/A	MPPYLRAWGMCYGSHKIFPEIPGQMSVGTCIILCMSNELISSKYTFVCDPDECDCLIELTSSDGFGFPSGVTQLTCPCGRNTTLVSVEHATIQPTNQTEEKMDTTTIGSDAFHSPAVEYNPDLLVTYKVIKGYSDPEFTTSKVTSLEWDLHNGRQSQKTVSLLQSKISTVKDIILEAYAMSDDQETLQAIAEALDIELTRDIEFTATVEVSGTITLNLLEDYDLESEITDALYVDAHNGNIVIDDQEVCHVREA*
Ga0119951_10053474	F000311	GAG	MYFELTAPDRLSMEMAYWDAQMLGLDPEAMSPLTFNIGTGSIEKVSRIRDKYNLTESYLSDYEPTGYTGR*
Ga0119951_10053477	F000450	GGCGG	MGDRANFVFVQNNGETIVLYGHWAGYNMLANLAEAVAKAEPRWGDDSYATRIAISQMVGDGWSSETGWGLSVNQIADNEHKIPVIDWKGRTFSLHEEDTFANTDNKVRGMKNEALFTMDLSAFVEKYSDVTLPV*
Ga0119951_10053479	F000868	AGGTGG	MSFLENENQMIIDATYSEIGDMLVEDWVNSNLDEGQMYADFRFAEMSDSNYLKGRFNQFYDLKPGDQYYLEWDEEA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0119951_1005347

Overview

Ecosystem & Geography

Associated Families

Sequences