Scaffold Ga0119951_1004321

Overview

Basic Information

• Taxon OID: 3300012000
• Scaffold ID: Ga0119951_1004321
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7078
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000714	Metagenome / Metatranscriptome	924	Y
F003663	Metagenome / Metatranscriptome	474	Y
F004051	Metagenome / Metatranscriptome	455	Y
F017134	Metagenome / Metatranscriptome	242	Y
F038643	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_10043211	F000714	N/A	MCTLVSVEDATIQPTTTEEEKMETATIGSDALHSPEVEYNPNLLVTYKVLHGYSDPEYTTSKVTSLEWDLHNGRQSQKRVGLLESNINTVKNIILESYADSEDQETLQAIAEALGIELTKDVEFTATIEVSGTITLNLLEDYDLESEITDALYVDANHGNIQIDDTEVCHVREAY*
Ga0119951_100432110	F038643	AGG	MKDMTRWALFPFTVDGVEFVSKLDIEGSMYQRVTKVPAHVFNAMNEGAIRELVGKVSLMSRDEIQTQLDRVNEGYSQAYIALA*
Ga0119951_100432113	F017134	GGA	MEQFTVACLNYEICGAEETFDSIEEYEIYGDDYICAECYDSEEMEFYEIAGWADADALASAGHGMDEDY*
Ga0119951_10043217	F004051	AGGA	MTIDNKTYAVGDLFTTLKSKETGVIKEIISNASGSVRVRLETENGERWTTISADSLA*
Ga0119951_10043219	F003663	AGGA	MLSTATALLDATKESIFDEDIMGLAGELHTRRNELSDEIFAKYLFMYSSAVAAKVADSITKVLLTEKEMSDLIATIDELENLSETILEENE*