Scaffold Ga0119951_1003585

Overview

Basic Information

• Taxon OID: 3300012000
• Scaffold ID: Ga0119951_1003585
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7976
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003962	Metagenome / Metatranscriptome	459	Y
F019450	Metagenome / Metatranscriptome	229	Y
F036596	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_100358510	F036596	AGGA	MNKTKTWKIGECCTGGIIQAKISENAYFPGSTTVKILIKDWKTKEILDSQVFGRIHESRLLSYLHDMTTSFHASNVMEWVKENAWPHRVLVAFDGGDNWKTQVEPRTWSRS*
Ga0119951_100358513	F019450	GGAGG	MKTVYAVYNSIGQFQARFLTWRSALRWAIREGMEWSAVIRKEVGE*
Ga0119951_100358517	F003962	N/A	IALLQRENAQLHGVLRLLGQLVDDMNANCSYEVFEVQWNSLTEQVKRLSGFFESHQKALQSLQDSIPDVWDQDEVDDLES*