Scaffold Ga0119951_1003272

Overview

Basic Information

• Taxon OID: 3300012000
• Scaffold ID: Ga0119951_1003272
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8466
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002540	Metagenome / Metatranscriptome	550	Y
F003377	Metagenome / Metatranscriptome	490	Y
F015583	Metagenome / Metatranscriptome	253	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_100327216	F015583	AGGA	MRSVLAALVLSAMVSVAAADTVIVRGGAAVISAQDHATIIARRGTLVHSHCGQTEGIAMGATPEAARRNCCYFGRRQIVEEGVAYSPATRRWYAVIRYR*
Ga0119951_10032723	F003377	AGGAG	MTDEMKGTMFSIVERWGFPTLVAIAFGWTLRQDVLLPLVHAHTQFLEQLGDTQKDISMAIQEQTKLLYALQPKAKFETTAVPHDTPPHN*
Ga0119951_10032728	F002540	AGGAGG	MTTPNYAATADEYEKYGANLNIWQQLQLLSAWSPLIGYGQRFVNETDPYRKTLIVSDAIEWLASKTDAQVDDELVRQVSAILKTPQGESLVRWCLSKVESAT*