Scaffold Ga0119951_1003265

Overview

Basic Information

• Taxon OID: 3300012000
• Scaffold ID: Ga0119951_1003265
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8475
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002540	Metagenome / Metatranscriptome	550	Y
F012767	Metagenome	277	Y
F017816	Metagenome	238	Y
F081248	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_100326510	F017816	N/A	MAPWLIILTGGIYLVVAADLALHGKAGLGLAYLGYAFANVGLYLAARTP*
Ga0119951_100326514	F012767	GGA	MRALCERYTITRDQVIRLRDVWNLPLRNDRRLRFKPKRSEMRDPTPREIAQACREIQAKWDERTREERSVIKTQYVSLRRIEMTEEALEAFHELEGE*
Ga0119951_100326516	F002540	AGGAGG	MSTPNYQGTADEYAKFGPSLNIWQQLALLQAWAPLIGYGQRFVNEIDPYRKSLVVSDAAEWLASKTNAQADDQLVRLLADILKTPQGEALVRFLLLQAEAAK*
Ga0119951_100326518	F081248	GGAGG	MADFLPLMGYVPDREGTDAFLSTLARPTLAQAGPDLVLDESRDVFLGQYLLACDPGWKRGAQKIGSCVGWGWALACDILAACDILLRRETESYGGRVLEASIYAFSRVEVRGGRNLGGDGSYGGAAAKAVTKYGTLHYGQNYDGVTFTDNSGRRGEGR