Scaffold Ga0119951_1002909

Overview

Basic Information

• Taxon OID: 3300012000
• Scaffold ID: Ga0119951_1002909
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9148
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047653	Metagenome	149	Y
F065782	Metagenome	127	Y
F067675	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_100290918	F047653	GGAGG	MQSGDLVFIMGHPSRPIFGTRTVGGLNCTETITHGTPALVVDVDNDCAAKRVHVKVLVQGMTLWVPGGFVKASNEDG*
Ga0119951_10029092	F065782	AGGAGG	MATRSVIGYIQEDGSFLGVYAHYDGYPSGVGSNLLKMNPDDIKTMVTAGIMKGGIRAINSPDLAEVEYFEEHWPEACRTQLPGGEEYDYILDTDGSLTCTDSQGNDIPQDQWRR*
Ga0119951_10029094	F067675	AGGAGG	MALIITRPTQSTTFNDGTGRNAILRNDSGQHFLVSEVHRTPAPGHRIDETLVFPCTAEGDVTDWCEVWSGNSVEDVLSTFNG*