Scaffold Ga0119951

Basic Information
Taxon OID	3300012000 Open in IMG/M
Scaffold ID	Ga0119951_1002411 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Institute of Technology
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012000 Open in IMG/M

Scaffold ID

Ga0119951_1002411 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Georgia Institute of Technology

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10262
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (75.86%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

10262

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (75.86%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.21	Long. (^o)	-83.96	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.21

Long. (^o)

-83.96

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000868	Metagenome / Metatranscriptome	853	Y
F001125	Metagenome / Metatranscriptome	769	Y
F003422	Metagenome / Metatranscriptome	487	Y
F005741	Metagenome / Metatranscriptome	391	Y
F074872	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_100241116	F074872	N/A	MSDPSATILTYTERKQMTIDNKTYQVGDLFTTLKSKETGVIKEIIPNSSGSVRVRLETDNGERWTTVLADNLA*
Ga0119951_100241119	F005741	AGGA	MKNRFRIEIYDANKANDLTLYSEQGVDREYLNELVFSNLRRFHGRVNAYVFDNQKKKKVTAMFLDESIANKLQTN*
Ga0119951_100241122	F003422	N/A	MTNELVSSKYTFVCDPDECDCLIELTSSDGFGFPSGVTQLTCPCGRQTTLVSVEHARIQPTNQTKEEKMEEATSMHDLPLSDSEKYNPDLLVTYKVLSGYSDPTYATDKVRNIEWELHNSRQNSKAVSTLQNKIGTVKDIISEAYADSDDQDTLRAIAEALDIPLVKEIEWSATIEVSGTITVDLLEGDVDVEQEIYDNLYVESQNGNVEVCDTEVTNVREN*
Ga0119951_100241126	F001125	GGCGG	MGDRANFGFKDSKGDTIFLYGHWAGHGMLERLANAVSAAEPRWTDEAYATRICISRMVAEDWTQETGWGLSVNRILDNEHKIPVIDWASQTFTLFEEDLTTEVFSLSLDKFCTKYSQPVMV*
Ga0119951_100241128	F000868	AGGTGG	MSFLENENQMVIDATYQEIGEMLVEDWVNSNLDEGQLFADYRFAEMCESNYLKGRFNQFYDLKPEDQYYIEWNEEA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0119951_1002411

Overview

Ecosystem & Geography

Associated Families

Sequences