Scaffold Ga0119951_1002271

Overview

Basic Information

• Taxon OID: 3300012000
• Scaffold ID: Ga0119951_1002271
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10674
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006590	Metagenome / Metatranscriptome	369	N
F012574	Metagenome / Metatranscriptome	279	Y
F057370	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_100227110	F057370	N/A	MKLRLIKEWNGKPAGATGVFLSDYGKELIADGIAELLDDDFVVEVMPEKKTQETQQPIYIPVPMPMEYFEEENDLENIDVNINLSKPKK*
Ga0119951_100227112	F006590	N/A	MKTIKIANADIPVKFGMFVLGTFLRERNLKLSDLSQLGEDLLFVLELAFAGVQAGYKAKGEKCPYTLEKFCDLVDLDKGGINRITELITNEITVQEDQERKNEIAEEQN*
Ga0119951_10022712	F012574	AGGA	MYLIKNINLLIMEILMHKHEYAQQVRQLNCTSGYFHRFYELIPECKTHLEAWQKLEEEREELGLNEKYTTYSSFRKAKSNYMEIKFV*