Scaffold Ga0119951_1002220

Overview

Basic Information

• Taxon OID: 3300012000
• Scaffold ID: Ga0119951_1002220
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10853
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031072	Metagenome / Metatranscriptome	183	Y
F098637	Metagenome / Metatranscriptome	103	Y
F102624	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_100222011	F102624	GAG	MKYITNNYEYKNEWFNVLLSLLFTPFYSCFFIQKFSLTQIKSYLSPERRHVLKYPIITGLLYTVETVVVFYALNTITLSYYTILRSGFIIFNIPWFKYLLKKPITRLYYISCGSLVVAQVVSSAQYIFYYQANSDRRAQNVIQNIVIVFISCFLNSTYNNVIEYAMSNHGNSITNIDFQIMFQATYFALALPWAVYYTTKHPPPMNTSTMTMYFFIAFGLQLYMFNKIYILNSKERAIPANILLSGLDIIRRVIQLTYSFVWFKEPFDAIIGVSLLFLAASGGLLLYQYIYDYRVGMA
Ga0119951_10022203	F098637	N/A	MYTIINRLKFNRTMNTNNCPPAPPSTPYPEDTNEYHGWYSHAQQVMRVSHPSSHKFNGKIMVSPPYCYWTQGDRKVLVTEVSHTSIPTPRQVANGDIYLGRVDKYWGRSYTRLAETS*
Ga0119951_10022204	F031072	N/A	MQTLQFTNPNPRTSPAGLSGSFNANNQGYSGTGRVTIGNENRNVFVQGQVSGGWSGGRPNVGGMVGGMIRF*