Basic Information | |
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Taxon OID | 3300012000 Open in IMG/M |
Scaffold ID | Ga0119951_1002082 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Institute of Technology |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11367 |
Total Scaffold Genes | 25 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (76.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.21 | Long. (o) | -83.96 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002009 | Metagenome / Metatranscriptome | 604 | Y |
F002826 | Metagenome / Metatranscriptome | 527 | Y |
F004010 | Metagenome / Metatranscriptome | 457 | Y |
F019450 | Metagenome / Metatranscriptome | 229 | Y |
F041081 | Metagenome | 160 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0119951_100208212 | F002826 | GGA | MEVEAKNRLKWARDILLSAREKLAVERDRANHGHAIDIIQIIALVDAAALVCKEITGENNENTQRDSNAG* |
Ga0119951_100208213 | F004010 | N/A | MHELAMDNKKKGKARGAGGVPRSQKQMIAIALSAAGESNKSPRKFKAKSGM* |
Ga0119951_10020822 | F019450 | GAGG | MTFYAVYNSQGQFFARFTSYSNALRWAVRNGMEWSAIIRKEKENDKCS* |
Ga0119951_100208223 | F041081 | AGGAG | MIIEDVSVDFEFNGKKYTAYGNAEIDTITEDIGPVGYREHYYAEVVNNVIMSKIEISTDTEDIKNPDKDLLEKADDALCCQAEEDFDAGR* |
Ga0119951_100208224 | F002009 | GGA | MTAPTIQEIGNAAQEIVWRVMGKGSDKSAYGDWLEKDRPTHDYHIARAIRHLATAQMQLHKSTPCPDNNGETSVDHLERALVRSLFVLAQIKKEIPRL* |
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