Scaffold Ga0119951_1002082

Overview

Basic Information

• Taxon OID: 3300012000
• Scaffold ID: Ga0119951_1002082
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11367
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (76.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F002826	Metagenome / Metatranscriptome	527	Y
F004010	Metagenome / Metatranscriptome	457	Y
F019450	Metagenome / Metatranscriptome	229	Y
F041081	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_100208212	F002826	GGA	MEVEAKNRLKWARDILLSAREKLAVERDRANHGHAIDIIQIIALVDAAALVCKEITGENNENTQRDSNAG*
Ga0119951_100208213	F004010	N/A	MHELAMDNKKKGKARGAGGVPRSQKQMIAIALSAAGESNKSPRKFKAKSGM*
Ga0119951_10020822	F019450	GAGG	MTFYAVYNSQGQFFARFTSYSNALRWAVRNGMEWSAIIRKEKENDKCS*
Ga0119951_100208223	F041081	AGGAG	MIIEDVSVDFEFNGKKYTAYGNAEIDTITEDIGPVGYREHYYAEVVNNVIMSKIEISTDTEDIKNPDKDLLEKADDALCCQAEEDFDAGR*
Ga0119951_100208224	F002009	GGA	MTAPTIQEIGNAAQEIVWRVMGKGSDKSAYGDWLEKDRPTHDYHIARAIRHLATAQMQLHKSTPCPDNNGETSVDHLERALVRSLFVLAQIKKEIPRL*